This special focus is jointly sponsored by the Center for Discrete Mathematics and Theoretical Computer Science (DIMACS), the Biological, Mathematical, and Physical Sciences Interfaces Institute for Quantitative Biology (BioMaPS), and the Rutgers Center for Molecular Biophysics and Biophysical Chemistry (MB Center).
Sunday, June 28, 2009 10:30 - 12:30 Software Review discussion (internal discussion). Brandilyn Stigler, Franziska Hinkelmann and Paola Vera-Licona 12:30 - 2:00 Lunch 2:00 - 2:15 Welcome to Working Group Paola Vera-Licona 2:15 - 2:45 Introduction Reinhard Laubenbacher 3:00 - 3:45 Systems Identification for Discrete Polynomial Models of Gene Regulatory Networks Paola Vera-Licona 3:45 - 4:00 Coffee Break 4:00 - 5:00 Algorithm concatenation and software webpage Brandilyn Stigler 5:00 - 6:30 Group Discussion (Discussion with guests and collaborations) 7:00 - 9:00 Working Dinner Monday, June 29, 2009 9:00 - 9:30 Breakfast 9:30 - 10:30 Multi-state Evolutionary Algorithm Luis David Garcia 10:30 - 11:30 Nested Canalizing Functions Code Abdul Jarrah 11:30 - 12:30 Break-out sessions/code development/testing 12:30 - 2:00 Lunch 2:00 - 4:30 Break-out sessions/code development 4:30 - 6:00 Subgroups reports on coding/evaluation of software 6:00 - 8:00 Working dinner (Multi-state software extension) Tuesday, June 30, 2009 9:00 - 9:30 Breakfast 9:30 - 12:00 Break-out sessions/code development/testing 12:00 - 1:30 Lunch 1:30 - 4:00 Discussion and Assessment of progress made and plan to complete project.