DIMACS Workshop on Analysis of Gene Expression Data

October 24 - 26, 2001
DIMACS Center, Rutgers University, Piscataway, NJ

Laurie Heyer, Davidson College, laheyer@davidson.edu
Gustavo Stolovitzky, IBM, gustavo@us.ibm.com
Shibu Yooseph, Celera Genomics, shibu.yooseph@celera.com
Presented under the auspices of the Special Year on Computational Molecular Biology.


Wednesday, October 24, 2001

1:30-2:00 Registration 2:00-2:05 Welcome and Greeting: Mel Janowitz, DIMACS Associate Director 2:05-2:15 Welcome and Greeting: Workshop Organizers 2:15-3:45 Tutorial: Peter Tolias, Center for Applied Genomics, Public Health Research Institute Emerging Technologies for Gene Expression Analysis 3:45-4:15 Break 4:15-5:45 Tutorial: Yuhai Tu, IBM A Brief Review of Methods Used in the Analysis of Gene Expression Data

Thursday, October 25, 2001

8:15-9:00 Breakfast and Registration 9:00-10:00 Richard Karp, University of California, Berkeley Combinatorial and Information-Theoretic Approaches to Mining Gene Expression Data 10:00-10:30 Vladimir Filkov and Sorin Istrail, Celera Genomics Inferring Gene Transcription Networks: The Davidson Model 10:30-11:00 Break 11:00-11:30 Felix Naef, Daniel Lim, Nila Patil and Marcelo Magnasco=20 The Laboratories of Mathematical Physics and Neurogenesis, The Rockefeller University, Perlegen Sciences Inc. and Affymetrix Inc. From features to expression: High-density oligonucleotide array analysis revisited 11:30-12:00 Chao Deng, Aili Wang, Denong Wang, and Peisen Zhang, Columbia University A Nonlinear Channel Normalization Approach for cDNA Microarray Data and its Performance Analysis 12:00-2:15 Lunch 2:15-2:45 Alvaro Mateos, Joaquin Dopazo, Yuhai Tu, Ronald Jansen, Mark Gerstein and Gustavo Stolovitzky Centro Nacional de Investigaciones Oncologicas (CNIO) - Madrid, IBM Computational Biology Center, and Yale University What can be "learned" from Gene Expression Arrays? 2:45-3:30 DIMACS - Celera Genomics/Applied Biosystems Graduate Student Award Presentation Winner: Itsik Pe'er, Tel Aviv University Award Presenters: Fred S. Roberts, DIMACS Director Sorin Istrail, Celera Genomics Award lecture by award winner, Itsik Pe'er Computational Resequencing by Universal Microarrays 3:30-4:00 Gregory Dewey, David Galas and Ashish Bhan, Keck Graduate Institute of Applied Life Sciences and Claremont Graduate University A Network Analysis of Expression Time Series 4:00-4:30 Break 4:30-5:30 Gary Stormo, Washington University Medical School Using Expression Data to Learn About Regulatory Networks Via Promoter Analysis 5:30-6:00 Thomas Heiman, George Mason University Lessons from the Analysis of Gene Expression Data: A comparison of methods for inferring gene networks and different data sets

Friday, October 26, 2001

8:30-9:00 Breakfast and Registration 9:00-10:00 Amir Ben-Dor, Agilent Laboratories Overabundance Analysis with Applications in Cancer Sub-CLassification 10:00-10:30 Mat Soukup and Jae K. Lee, Univeristy of Virginia Identifying Multiple-Factor Genes and Evaluating Classification Probability for Distinct Biological Groups Based on Gene Expression Data: Stepwise Cross-Validated Discriminant Analysis 10:30-11:00 Break 11:00-11:30 Rebecka Jornsten, University of California, Berkeley MDL Gene Subset Selection for Classification 11:30-12:00 Virginie Aris, Peter Tolias and Michael Recce, Center for Applied Genomics, Public Health Research Institute, and Center for Computational Biology and Bioengineering, NJIT Selective Expression Algorithm for Class Separation for DNA Microarrays 12:00-2:00 Lunch 2:00-3:00 Yidong Chen, Cancer Genetics Branch, National Human Genome Research Institute, National Institutes of Health, Bethesda, Maryland Microarray Image Analysis and Expression Ratio Statistics 3:00-3:30 N. Ge, F. Huang, P. Shaw and C. Wu, Aventis Pharmaceuticals, Bristol-Myers Squibb, and University of Michigan PIDEX: a Statistical Approach for Screening Differentially Expressed Genes Using Microarray Analysis 3:30-4:00 Break 4:00-5:00 Honghui Wan, NCGR, NIH Gene Expression Analysis System from Multiple Biological Information Resources 5:00-5:30 S. Rifkin and J. Kim, Yale University Geometry of Gene Expression Dynamics

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Document last modified on March 13, 2003.