DIMACS Working Group on Software Development on Parameter Estimation for Boolean Models of Biological Networks

June 28 - 30, 2009
DIMACS Center, CoRE Building, Rutgers University

Organizers:
Paola Vera-Licona, DIMACS, mveralic at math.rutgers.edu
Presented under the auspices of the DIMACS/BioMaPS/MB Center Special Focus on Information Processing in Biology.

This special focus is jointly sponsored by the Center for Discrete Mathematics and Theoretical Computer Science (DIMACS), the Biological, Mathematical, and Physical Sciences Interfaces Institute for Quantitative Biology (BioMaPS), and the Rutgers Center for Molecular Biophysics and Biophysical Chemistry (MB Center).

Workshop Program:

This is a preliminary program. 

Sunday, June 28, 2009

10:30 - 12:30  Software Review discussion (internal discussion). 
               Brandilyn Stigler, Franziska Hinkelmann and Paola Vera-Licona

12:30 -  2:00  Lunch

 2:00 -  2:15  Welcome to Working Group
               Paola Vera-Licona

 2:15 -  2:45  Introduction
               Reinhard Laubenbacher

 3:00 -  3:45  Systems Identification for Discrete Polynomial Models
               of Gene Regulatory Networks
               Paola Vera-Licona

 3:45 -  4:00  Coffee Break 

 4:00 -  5:00  Algorithm concatenation and software webpage
               Brandilyn Stigler

 5:00 -  6:30  Group Discussion (Discussion with guests and collaborations)

 7:00 -  9:00  Working Dinner

Monday, June 29, 2009

 9:00 -  9:30  Breakfast

 9:30 - 10:30  Multi-state Evolutionary Algorithm
               Luis David Garcia

10:30 - 11:30  Nested Canalizing Functions Code
               Abdul Jarrah

11:30 - 12:30  Break-out sessions/code development/testing

12:30 -  2:00  Lunch

 2:00 -  4:30  Break-out sessions/code development

 4:30 -  6:00  Subgroups reports on coding/evaluation of software

 6:00 -  8:00  Working dinner (Multi-state software extension)

Tuesday, June 30, 2009

 9:00 -  9:30  Breakfast

 9:30 - 12:00  Break-out sessions/code development/testing

12:00 -  1:30  Lunch

 1:30 -  4:00  Discussion and Assessment of progress made and plan to complete project.
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Document last modified on June 10, 2009.