This special focus is jointly sponsored by the Center for Discrete Mathematics and Theoretical Computer Science (DIMACS), the Biological, Mathematical, and Physical Sciences Interfaces Institute for Quantitative Biology (BioMaPS), and the Rutgers Center for Molecular Biophysics and Biophysical Chemistry (MB Center).
Monday, May 18, 2009
8:15 - 8:55 Breakfast and Registration
8:55 - 9:00 Welcome and Opening Remarks
Tami Carpenter, DIMACS Associate Director
9:00 - 9:45 An Additive D-Stability Condition and Application to Reaction-Diffusion Systems
Murat Arcak, University of California-Berkeley
9:45 - 10:00 Break
10:00 - 10:45 Using Algebraic Geometry to Study Protein Phosphorylation
Jeremy Gunawardena, Harvard Medical School
10:45 - 11:15 Break
11:15 - 12:00 Complete Networks of Reversible Binding Reactions
Gilles Gnacadja, Amgen
12:00 - 2:00 Lunch
2:00 - 2:45 Metabolic Flux Balance Analysis and Related Computational Challenges
A. Agung Julius, Rensselaer Polytechnic Institute
2:45 - 3:00 Break
3:00 - 3:45 Predicting injectivity in interaction networks from their structure
Murad Banaji, University of Essex and University College London
3:45 - 4:15 Break
4:15 - 5:00 Asymptotic Behaviors in Multisite Phosphorylation-dephosphorylation Cycles
Liming Wang, University of California-Irvine
5:00 Dinner
Tuesday, May 19, 2009
8:30 - 9:00 Breakfast and Registration
9:00 - 9:45 Analysing Stochasticity in Regulatory Networks: The Evolvability of
Gene Auto-regulation in the Presence of Noise
Joao Hespanha, University of California- Santa Barbara
9:45 - 10:00 Break
10:00 - 10:45 Input-output Behaviour of Stoichiometric Systems
Brian Ingalls, University of Waterloo
10:45 - 11:15 Break
11:15 - 12:00 Structure and qualitative dynamics in an apoptosis network
Madalena Chaves, INRIA-Sophia Antipolis
12:00 - 2:00 Lunch
2:00 - 2:45 The deficiency zero theorem for stochastically modeled systems
David Anderson, University of Wisconsin-Madison
2:45 - 3:00 Break
3:00 - 3:45 Stochastic control analysis
Herbert Sauro, University of Washington
3:45 - 4:15 Break
4:15 - 5:00 Recent progresses on the metabolism modelling of Bacteria: definition
of local and global modules and a first explanation of their emergence
Vincent Fromion, INRA Jouy-En-Josas
Wednesday, May 20, 2009
8:30 - 9:00 Breakfast and Registration
9:00 - 9:45 Relaxation Oscillations and a Cell Cycle Oscillator
Tomas Gedeon, Montana State University
9:45 - 10:00 Break
10:00 - 10:45 Modular Cell Biology: Retroactivity and Insulation
Domitilla Del Vecchio, University of Michigan
10:45 - 11:15 Break
11:15 - 12:00 Kinetics of the cell cycle
Sergei Pilyugin, University of Florida
12:00 - 2:00 Lunch
2:00 - 2:45 Identifiability of Chemical Reaction Networks
Gheorghe Craciun, University of Wisconsin-Madison
2:45 - 3:00 Break
3:00 - 3:45 Bifurcations in Systems with Mass Action Kinetics
Carsten Conradi, Max Planck Institute
Posters
TinkerCell, a flexible application for analysis of biological systems
Deepak Chandran, Frank Bergmann, Herbert Sauro, University of Washington
Density-Profile Processes Describing Biological Signaling Networks:
Almost Sure Convergence to Deterministic Trajectories
Eduardo Jordao Neves, University of Sao Paulo, Brazil
Stochastic Control Analysis for Biochemical Reaction Systems
Kyung Hyuk Kim, University of Washington
Comprehending Biochemical Network Dynamics through Automatic Inference of State Transition Diagrams
Debprakash Patnaik, Vandana Sreedharan, Yang Cao, and Naren Ramakrishnan, Virginia Tech
An algorithm for proving global entrainment and
synchronization of biological systems
Giovanni Russo, University of Naples
Reconciling a Biochemical Switch Catalog with Network Theories of Bistability
Vandana Sreedharan, Virginia Tech
Permanent Coexistence for an Intraguild Predation Model with Predator Stage Structure
James A. Vance, The University of Virginia's College at Wise
Previous: Participation
Next: Registration
Workshop Index
DIMACS Homepage