DCI '04 Book List


Bioinformatics for Dummies
Jean-Michel Claverie, Cedric Notredame

Bioinformatics: Sequence and Genome Analysis
Cold Spring Harbor Laboratory Press

Data Analysis Tools for DNA Microarrays
Sorin Draghici
Chapman & Hall/CRC, 2003

Discovering Genomics, Proteomics, & Bioinformatics
Campbell & Heyer
Benjamin Cummings

Fundamental Concepts of Bioinformatics
Dan E. Crane, Michael L. Raymer

Introduction to Computational Molecular Biology
Setubal and Meidanis

Microarray Analysis
Mark Schena
John Wiley & Sons, 2003

Practical Algorithms for Image Analysis: Description Examples and Code
Michael Seul, Lawrence O'Gorman, Michael J. Sammon
Cambridge University Press, 2000

Statistical Analysis of Gene Expression Microarray Data
Edited by Terry Speed
Chapman & Hall/CRC, 2003


Angulo, J., Serra J. (2003) Automatic analysis of DNA microarray images using mathematical morphology.
Bioinformatics 19:553-562.

Bozinov, D., Rahnenfuhrer J. (2002) Unsupervised technique for robust target separationand analysis of
DNA microarray spots through adaptive pixel clustering. Bioinformatics 18:747-756.

Brown CS., Goodwin PC., Sorger PK. (2001) Image metrics in the statistical analysis of DNA microarray data.
Proc Natl Acad Sci USA 98:8944-8949.

Fielden MR., Halgren RG., Dere E., Zacharewski. (2001) GP3: GenePix post-processing program for automated
analysis of raw microarray data. Bioinformatics 18:771-773.

Glaseby CA., Ghazal P. (2003) Combinatorial image analysis of DNA microarray features. Bioinformatics 19:194-203.

Jain AN., Tokuyasu, TA., Snijders, AM., Segraves R., Albertson DG., Pinkel D. (2002) Fully automatic quantification
of microarray image data. Genome Research 12:325-332.

Jung H., Cho H., (2002) An automatic block and spot indexing with k-nearest neighbors for microarray image
analysis. Bioinformatics 18 S2:S141-S151.

Nunez-Garcia J., Mersinias V., Cho KH., Smith CP., Wolkenhauer O. (2003) The statistical distribution of the
intensity of pixels within spots of DNA microarrays: What is the appropriate single-value representative?
Appl Bioinformatics 2(4):229-239.

Yang YH., Buckley M., Speed TP. (2001) Analysis of cDNA microarray images. Briefings in Bioinformatics 2:341-349.