BMCI '06 Book List




Bioinformatics for Dummies

Jean-Michel Claverie, Cedric Notredame


Bioinformatics:  Sequence and Genome Analysis


Cold Spring Harbor Laboratory Press


Data Analysis Tools for DNA Microarrays

Sorin Draghici

Chapman & Hall/CRC, 2003


Discovering Genomics, Proteomics, & Bioinformatics

Campbell and Heyer

Benjamin Cummings



Leon Gordis

W.B. Saunders Company; 3rd Updtd edition (December 2004)

ISBN: 1416025308


Fundamental Concepts of Bioinformatics

Dan E. Krane, Michael L. Raymer


Introduction to Computational Molecular Biology

Setubal and Meidanis

PWS Publishing Company


Microarray Analysis

Mark Schena,

John Wiley & Sons, 2003


Practical Algorithms for Image Analysis:  Description, Examples, and Code

Michael Seul, Lawrence O’Gorman, Michael J. Sammon

Cambridge University Press, 2000


Statistical Analysis of Gene Expression Microarray Data

Edited by Terry Speed

Chapman and Hall/CRC, 2003


Journal Articles


Angulo J, Serra J. (2003) Automatic analysis of DNA microarray images using mathematical

            morphology.  Bioinformatics 19:553-562.


Bozinov D, Rahnenfuhrer J. (2002) Unsupervised technique for robust target separation and

            analysis of DNA microarray spots through adaptive pixel clustering.  Bioinformatics


Brown, CS., Goodwin PC., Sorger PK. (2001) Image metrics in the statistical analysis of DNA

            microarry data.  Proc Natl Acad Sci USA. 98:8944-8949.


Fielden MR., Halgren RG., Dere E., Zacharewski TR. (2001) GP3:  GenePix post-processing

            Program for automated analysis of raw microarray data.  Bioinformatics 18:771-773.


Glaseby CA., Ghazal P. (2003) Combinatorial image analysis of DNA microarray features.

            Bioinformatics 19:194-203.


Jain, AN., Tokuyasu, TA., Snijders, AM., Segraves, R., Albertson, DG., Pinkel, D. (2002)

Fully automatic quantification of microarray image data. Genome Research 12: 325- 332.


Jung, H., Cho, H., (2002)  An automatic block and spot indexing with k-nearest neighbors for

            microarray image analysis.  Bioinformatics 18 S2: S141-S151.


Nunez-Garcia J., Mersinias V., Cho KH., Smith CP., Wolkenhauer O. (2003) The statistical

            distribution of the intensity of pixels within spots of DNA microarrays:  what is the

            appropriate single-value representative? Appl Bioinformatics 2(4):229-239.


Yang YH., Buckley M., Speed TP. (2001) Analysis of cDNA microarray images. Briefings in

            Bioinformatics 2:341-349.