BMCI '06 Book List

Books

Bioinformatics for Dummies

Jean-Michel Claverie, Cedric Notredame

Bioinformatics: Sequence and Genome Analysis

Mount

Cold Spring Harbor Laboratory Press

Data Analysis Tools for DNA Microarrays

Sorin Draghici

Chapman & Hall/CRC, 2003

Discovering Genomics, Proteomics, & Bioinformatics

Campbell and Heyer

Benjamin Cummings

Epidemiology

Leon Gordis

W.B. Saunders Company; 3rd Updtd edition (December 2004)

ISBN: 1416025308

Fundamental Concepts of Bioinformatics

Dan E. Krane, Michael L. Raymer

Introduction to Computational Molecular Biology

Setubal and Meidanis

PWS Publishing Company

Microarray Analysis

Mark Schena,

John Wiley & Sons, 2003

Practical Algorithms for Image Analysis: Description, Examples, and Code

Michael Seul, Lawrence O’Gorman, Michael J. Sammon

Cambridge University Press, 2000

Statistical Analysis of Gene Expression Microarray Data

Edited by Terry Speed

Chapman and Hall/CRC, 2003

Journal Articles

Angulo J, Serra J. (2003) Automatic analysis of DNA microarray images using mathematical

morphology. Bioinformatics 19:553-562.

Bozinov D, Rahnenfuhrer J. (2002) Unsupervised technique for robust target separation and

analysis of DNA microarray spots through adaptive pixel clustering. Bioinformatics

18:747-756.

Brown, CS., Goodwin PC., Sorger PK. (2001) Image metrics in the statistical analysis of DNA

microarry data. Proc Natl Acad Sci USA. 98:8944-8949.

Fielden MR., Halgren RG., Dere E., Zacharewski TR. (2001) GP3: GenePix post-processing

Program for automated analysis of raw microarray data. Bioinformatics 18:771-773.

Glaseby CA., Ghazal P. (2003) Combinatorial image analysis of DNA microarray features.

Bioinformatics 19:194-203.

Jain, AN., Tokuyasu, TA., Snijders, AM., Segraves, R., Albertson, DG., Pinkel, D. (2002)

Fully automatic quantification of microarray image data. Genome Research 12: 325- 332.

Jung, H., Cho, H., (2002) An automatic block and spot indexing with k-nearest neighbors for

microarray image analysis. Bioinformatics 18 S2: S141-S151.

Nunez-Garcia J., Mersinias V., Cho KH., Smith CP., Wolkenhauer O. (2003) The statistical

distribution of the intensity of pixels within spots of DNA microarrays: what is the

appropriate single-value representative? Appl Bioinformatics 2(4):229-239.

Yang YH., Buckley M., Speed TP. (2001) Analysis of cDNA microarray images. Briefings in

Bioinformatics 2:341-349.